Cancer research analysis driven by the biology, not the defaults
Analyzing a cancer research dataset by first defining what meaningful biology looks like, then letting that definition choose the methods.
A cancer researcher had collected a dataset and needed to analyze it. The established path leans on published, widely cited software packages and the historical methods the field has standardized on. It's proven, but built around how this analysis has been done.
Rather than starting from those methods, we started from the science. Working together, the researcher defined what meaningful biology actually meant for this dataset, and we used that definition to inform the statistical and mathematical methods we reached for. Coding agents let us move quickly from a scientific question to working analysis and plotting code, so the conversation could stay focused on the biology instead of the code or tooling.
I paired with the researcher throughout, steering the coding agents and translating scientific intent into analysis code: implementing approaches, iterating on visualizations, and helping surface potentially meaningful signal in the data they had collected.